Standardize Seurat Metadata for CellDEEP — prepare_data • CellDEEP

Standardizes metadata columns to sample_id, group_id, and cluster_id so CellDEEP functions can run consistently.

prepare_data(
  Subset.Seurat,
  assay = "RNA",
  sample_id,
  group_id,
  cluster_id,
  file_path = NULL
)

Arguments

Subset.Seurat: A Seurat object.
assay: Character. Assay to use (default "RNA").
sample_id: Character. Metadata column name for sample IDs.
group_id: Character. Metadata column name for group IDs.
cluster_id: Character. Metadata column name for cluster IDs.
file_path: Character. Reserved for compatibility.

Value

A Seurat object with standardized metadata fields.